Preamble | Models | Overview | Notations | Major assumptions | Model 1 | Model 2 | Model 3 | Models in vector form | Other models | Examples of design matrices | Design matrix for GMAs | Design matrix for SMAs | Model 2' | Model 2'' | Model 3' | Data simulation | Sparse design | Design matrices | Parameters | Phenotypes | Inference | Model fits | Checks | Model comparisons | Reference | Appendix

Preamble | Overview | Simulate data | Simulate the genotypes | Set the dimensions | SNP genotypes | Additive genetic relationships | Simulate the phenotypes | Incomplete, yet balanced design | Field trial | Design matrices | Parameters | Phenotypes | Infer the parameters | Model 1 | Fit | Check | Model 2 | Model 3 | Model 2' | Model 2'' | Model 3' | Appendix

Preamble | Simulate data | Simulate the genotypes | Set the dimensions | SNP genotypes | Additive genetic relationships | Simulate the phenotypes | Design sparsity | Indices of plant mixtures | RYT (LER) and RYP | RYM | Explore the data | Yield map | Infer the parameters | Using intercrops only | Prepare the inputs | Fit the model | Checks | Parametric bootstrap | Using both sole crops and intercrops | Reference | Appendix

Preamble | Models | Overview | Notations | Major assumptions | Model 1 | Model 2 | Model 3 | Models in vector form | Other models | Examples of design matrices | Design matrix for GMAs | Design matrix for SMAs | Model 2' | Model 2'' | Model 3' | Data simulation | Sparse design | Design matrices | Parameters | Phenotypes | Inference | Model fits | Checks | Model comparisons | Reference | Appendix

Preamble | Overview | Simulate data | Simulate the genotypes | Set the dimensions | SNP genotypes | Additive genetic relationships | Simulate the phenotypes | Incomplete, yet balanced design | Field trial | Design matrices | Parameters | Phenotypes | Infer the parameters | Model 1 | Fit | Check | Model 2 | Model 3 | Model 2' | Model 2'' | Model 3' | Appendix

Preamble | Simulate data | Simulate the genotypes | Set the dimensions | SNP genotypes | Additive genetic relationships | Simulate the phenotypes | Design sparsity | Indices of plant mixtures | RYT (LER) and RYP | RYM | Explore the data | Yield map | Infer the parameters | Using intercrops only | Prepare the inputs | Fit the model | Checks | Parametric bootstrap | Using both sole crops and intercrops | Reference | Appendix